Package: dtangle 2.0.9
dtangle: Cell Type Deconvolution from Gene Expressions
Deconvolving cell types from high-throughput gene profiling data. For more information on dtangle see Hunt et al. (2019) <doi:10.1093/bioinformatics/bty926>.
Authors:
dtangle_2.0.9.tar.gz
dtangle_2.0.9.zip(r-4.5)dtangle_2.0.9.zip(r-4.4)dtangle_2.0.9.zip(r-4.3)
dtangle_2.0.9.tgz(r-4.4-any)dtangle_2.0.9.tgz(r-4.3-any)
dtangle_2.0.9.tar.gz(r-4.5-noble)dtangle_2.0.9.tar.gz(r-4.4-noble)
dtangle_2.0.9.tgz(r-4.4-emscripten)dtangle_2.0.9.tgz(r-4.3-emscripten)
dtangle.pdf |dtangle.html✨
dtangle/json (API)
| # Install 'dtangle' in R: |
| install.packages('dtangle', repos = c('https://gjhunt.r-universe.dev', 'https://cloud.r-project.org')) |
- shen_orr_ex - Example Subset of Shen-Orr deconvolution data set.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 5 years agofrom:990486bb16. Checks:OK: 3 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 10 2024 |
| R-4.5-win | NOTE | Oct 10 2024 |
| R-4.5-linux | NOTE | Oct 10 2024 |
| R-4.4-win | NOTE | Oct 10 2024 |
| R-4.4-mac | NOTE | Oct 10 2024 |
| R-4.3-win | OK | Oct 10 2024 |
| R-4.3-mac | OK | Oct 10 2024 |
Exports:dtangledtangle2find_markers
Dependencies:DEoptimR
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Estimate the offset terms. | baseline_exprs |
| Row-binds 'Y' with 'references' and generates 'pure_samples'. | combine_Y_refs |
| Deconvolve cell type mixing proportions from gene expression data. | dtangle |
| Deconvolve cell type mixing proportions from gene expression data. | dtangle2 |
| Estimate the gene type proportions. | est_phats |
| Find marker genes for each cell type. | find_markers |
| Determine gamma value by data type. | get_gamma |
| Determines number of markers 'n_markers', marker list 'mrkrs', and 'gamma'. | process_markers |
| Example Subset of Shen-Orr deconvolution data set. | shen_orr_ex |
