The Data | Arguments | 1. Y, references, and pure_samples | 2. n_markers, markers and marker_method | Letting dtangle determine the marker genes. | Specifying the marker genes explicitly. | How dtangle finds markers | 3. gamma and data_type | 4. summary_fn
Package: dtangle 2.0.10
dtangle: Cell Type Deconvolution from Gene Expressions
Deconvolving cell types from high-throughput gene profiling data. For more information on dtangle see Hunt et al. (2019) <doi:10.1093/bioinformatics/bty926>.
Authors:
dtangle_2.0.10.tar.gz
dtangle_2.0.10.zip(r-4.7-any)dtangle_2.0.10.zip(r-4.6-any)dtangle_2.0.10.zip(r-4.5-any)
dtangle_2.0.10.tgz(r-4.6-any)dtangle_2.0.10.tgz(r-4.5-any)
dtangle_2.0.10.tar.gz(r-4.7-any)dtangle_2.0.10.tar.gz(r-4.6-any)
dtangle_2.0.10.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
dtangle/json (API)
| # Install 'dtangle' in R: |
| install.packages('dtangle', repos = c('https://gjhunt.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- shen_orr_ex - Example Subset of Shen-Orr deconvolution data set.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:2b58975fa0. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 127 | ||
| source / vignettes | OK | 168 | ||
| linux-release | OK | 119 | ||
| macos-release | OK | 138 | ||
| macos-oldrel | OK | 139 | ||
| windows-devel | OK | 74 | ||
| windows-release | OK | 80 | ||
| windows-oldrel | OK | 69 | ||
| wasm-release | OK | 123 |
Exports:dtangledtangle2find_markers
Dependencies:DEoptimR
Basic Deconvolution using dtangle
Last update: 2026-08-21
Started: 2017-05-30
Basic Deconvolution using dtangle2
The Data | Arguments | 1. Y, references, and pure_samples | 2. n_markers, markers and marker_method | Letting dtangle2 determine the marker genes. | Specifying the marker genes explicitly. | How dtangle2 finds markers | inv_scale: supplying the correct scale data to dtangle2
Last update: 2026-08-21
Started: 2019-12-01
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Estimate the offset terms. | baseline_exprs |
| Row-binds 'Y' with 'references' and generates 'pure_samples'. | combine_Y_refs |
| Deconvolve cell type mixing proportions from gene expression data. | dtangle |
| Deconvolve cell type mixing proportions from gene expression data. | dtangle2 |
| Estimate the gene type proportions. | est_phats |
| Find marker genes for each cell type. | find_markers |
| Determine gamma value by data type. | get_gamma |
| Determines number of markers 'n_markers', marker list 'mrkrs', and 'gamma'. | process_markers |
| Example Subset of Shen-Orr deconvolution data set. | shen_orr_ex |